|
Restriction Analysis
Input: a valid nucleotide sequence in *.prt files in database directory (help on how to import your sequence: please see "add_howtos.txt" for more information).
Results: base-count, restriction sites positions, melting point calculation for DNA, restriction map, plasmid/linear DNA drawing
|
|
Protein Analysis
Input: a valid nucleotide sequence in *.prt files in database directory (help on how to import your sequence: please see "add_howtos.txt" for more information).
Results: translation, amino acids count,
disulfide bridges count, chemical properties of protein calculation, codon usage, prediction of
the secondary protein structure.
|
|
Molecular Weight Calculator
Input: a valid nucleotide sequence in *.prt files in database directory (help on how to import your sequence: please see "add_howtos.txt" for more information).
Results: Calculation of the molecular weight for double-/single-strand DNA in g/mol
|
|
Dotplot
Input: a valid nucleotide or amino acids sequence in the database directory (help on how to import your sequence: please see "add_howtos.txt" for more information).
Results: Dotplot graph with alignment data
|
|
Open Reading Frame (ORF) Search
Input: a valid nucleotide sequence in *.prt files in database directory (help on how to import your sequence: please see "add_howtos.txt" for more information).
Results: positions of the ORFs
|
|
Isoelectric Point (pI) Calculation
Input: a valid AMINO ACIDS sequence. If
the user has got only a DNA file, it is possible to create a corresponding
AA sequence using "Sequence Translator"-feature in "Extras"
Results: protein charge graph as a pH function
|
|
Primer design
Input: 5'-3' primer sequence.
Results: melting point calculation, hybridisation, self-hybridisation, homology search
|
|
|
Additional Programs (Plugins)
The program files can be found in the "PLUGINS" directory (*.DLL files). They will be automatically
recodnized by the main application. You can launch these programs from "Plugins" menu tab within the MB's interface
To download new plugins or update the installed versions please use automatic update function (you will have to
register the program, see here). If you do not want to register the program, then it is still possible
to see the list of available updates
here
If you want to develop your plugin for MB please read this document.
|
